July 27-28, 2020
9:00 am - 5:00 pm CST
Instructors: Saber Soleymani, Wendy Wong
Helpers: Mariana Villalba, Cheyenne Yancey Payne, Reilly Cooper, Kevin Amses, Matthew Gibson
Hosts: Emma Lehmberg, Simon Tye
Bioinformatics is an essential component of modern genomics research. These computer-intensive methods are often difficult to learn for many without guidance from experienced individuals. In turn, graduate students and early-career researchers at institutions with limited bioinformatics resources are at a disadvantage toward the use of these and other emerging tools in evolutionary biology. As part of Evolutionary Community Responses for Early Career Researchers (ECR2) 2020, the American Society of Naturalists' Graduate Council is hosting a Command-Line Bioinformatics for Beginners Workshop on July 27-28th, 2020. This workshop is free for all members of the American Society of Naturalists (ASN), Society for the Study of Evolution (SSE), or Society of Systematic Biologists (SSB). Applicants with no previous experience with bioinformatics tools and/or command-line programming will be prioritized.
To sign up for this workshop, click here.
This workshop is based on exercises from the Data Carpentry Genomics Workshop. Data Carpentry develops and teaches workshops on the fundamental data skills needed to conduct research. Its target audience is researchers who have little to no prior computational experience, and its lessons are domain specific, building on learners' existing knowledge to enable them to quickly apply skills learned to their own research. Participants will be encouraged to help one another and to apply what they have learned to their own research problems. For additional information about the Data Carpentry Genomics Workshop, click here.
Who: This workshop is for graduate students and post-doctoral researcherrs with no to minimal experience with bioinformatics tools and/or command-line programming.
Where: This training will take place online. The instructors will provide you with the information you will need to connect to this meeting.
When: July 27-28, 2020. Add to your Google Calendar.
Requirements: Participants must bring a laptop with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.) that they have administrative privileges on. They should have a few specific software packages installed listed under (Setup).
Accessibility: We are dedicated to providing a positive and accessible learning environment for all. Please notify the instructors in advance of the workshop if you require any accommodations or if there is anything we can do to make this workshop more accessible to you.
To participate in this workshop, you will need to:
Everyone who participates in Carpentries activities is required to conform to the Code of Conduct. This document also outlines how to report an incident if needed.
We will use this collaborative document for chatting, taking notes, and sharing URLs and bits of code. Simon - I think we can just use GitHub as a repository for the whole workshop. Have both datasets even, maybe, and all the notes, etc.
Data Carpentry is committed to improving their workshops and encourages all workshop participants to complete these short surveys before and after the workshop.
|Before starting||Pre-workshop survey|
|Morning||Project Organization and Management|
|Introduction to the Command Line|
|Afternoon||Data Wrangling and Processing|